Research Unit Knowledge-based Systems
Mathematical and Computational Modelling in the Information Age
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Predictive Modelling
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Journal papers
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2025 (1)
2024 (3)
2023 (2)
2022 (4)
2021 (12)
2020 (5)
2019 (7)
2018 (7)
2017 (10)
2016 (2)
2015 (1)
2014 (4)
2013 (7)
2012 (6)
2011 (6)
2010 (4)
2009 (2)
2008 (4)
2007 (1)
(5)
Predictive design of sigma factor-specific promoters
M. Van Brempt, J. Clauwaert, F. Mey, M. Stock, J. Maertens, W. Waegeman and M. De Mey(2020) NATURE COMMUNICATIONS. 11, 5822.
(4)
Using structured pathology data to predict hospital-wide mortality at admission
M. Deschepper, W. Waegeman, D. Vogelaers and K. Eeckloo(2020) PLOS ONE. 15, e0235117.
(3)
Discriminating bacterial phenotypes at the population and single-cell level: a comparison of flow cytometry and Raman spectroscopy fingerprinting
C. García-Timermans, P. Rubbens, J. Heyse, F.-M. Kerckhof, R. Props, A. G. Skirtach, W. Waegeman and N. Boon(2020) CYTOMETRY: PART A. 97, 713-726.
(2)
Fast pathogen identification using single-cell Matrix-Assisted Laser Desorption/Ionization-Aerosol Time-of-Flight mass spectrometry data and deep learning methods
C. Papagiannopoulou, R. Parchen, P. Rubbens and W. Waegeman(2020) ANALYTICAL CHEMISTRY. 92, 7523-7531.
(1)
Algebraic shortcuts for leave-one-out cross-validation in supervised network inference
M. Stock, T. Pahikkala, A. Airola, W. Waegeman and B. De Baets(2020) BRIEFINGS IN BIOINFORMATICS. 21, 262-271.
Conference papers
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2022 (1)
2019 (1)
2018 (1)
2017 (1)
2016 (2)
2015 (1)
2014 (1)
2013 (1)
2012 (4)
2011 (6)
2010 (8)
2009 (4)
2008 (2)
2007 (2)
2006 (2)
2023 (1)
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Editor
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Awards
Date
Title
W. Waegeman
18/08/2014
2015 IEEE CIS Outstanding TFS Paper Award
27/08/2012
Best Paper Award for Willem Waegeman
17/08/2012
Second Winner Award for Willem Waegeman
Students
Phd
MSc
PhD Students
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MSc Students
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Graduates
Phd
MSc
PhD Students
Name
Title
Date
N. Dewolf
A comparative study of conformal prediction methods for valid uncertainty quantification in machine learning
25/04/2024
D. Iliadis
Automated multi-target prediction with two-branch neural networks
17/11/2023
T. Mortier
Efficient algorithms for set-valued prediction in classification
23/06/2023
M. Gasparyan
Model reduction and parameter estimation for kinetic models of biochemical reaction networks
19/01/2023
F. Mey
Integration of synthetic biology, systems biology and machine learning for the production of chitooligosaccharides in Escherichia coli
18/01/2023
J. Clauwaert
Deep learning techniques for genome processing and annotation tasks in prokaryotes
24/09/2020
P. Rubbens
Machine learning approaches for microbial flow cytometry at the single-cell and community level
24/09/2019
C. Papagiannopoulou
A data-guided insight into global climate-vegetation dynamics
05/10/2018
M. Stock
Exact and efficient algorithms for pairwise learning
21/04/2017
MSc Students
Name
Title
Date
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