KERMIT -- Research Unit Knowledge-based Systems

Journal Papers (ISI)

Year

All
2024 (2)
2023 (7)
2022 (6)
2021 (6)
2020 (9)
2019 (9)
2018 (10)
2017 (9)
2016 (7)
2015 (5)
2014 (1)
2013 (6)
2012 (5)
2011 (2)
2010 (1)
2009 (2)

(87) Environment-dependent population dynamics emerging from dynamic energy budgets and individual-scale movement behavior
W. Barhdadi, A.J. Daly, J.M. Baetens and B. De Baets
(2024) OIKOS. 2024, e09986.

(86) A critical review of common pitfalls and guidelines to effectively infer parameters of agent-based models using Approximate Bayesian Computation
L. De Visscher, B. De Baets and J.M. Baetens
(2024) ENVIRONMENTAL MODELLING AND SOFTWARE. 172, 105905.

(85) pySODM : simulating and optimizing dynamical models in Python 3
T.W. Alleman, C.V. Stevens and J.M. Baetens
(2023) JOURNAL OF COMPUTATIONAL SCIENCE. 73, 102148.

(84) A stochastic mobility-driven spatially explicit SEIQRD COVID-19 model with VOCs, seasonality, and vaccines
T.W. Alleman, M. Rollier, J. Vergeynst and J.M. Baetens
(2023) APPLIED MATHEMATICAL MODELLING. 123, 507-525.

(83) Response of phytoplankton functional types to Hurricane Fabian (2003) in the Sargasso Sea
D. Avila-Alonso, J.M. Baetens, R. Cardenas and B. De Baets
(2023) MARINE ENVIRONMENTAL RESEARCH. 190, 106079.

(82) Mobility and the spatial spread of SARS-CoV-2 in Belgium
M. Rollier, G. Miranda, J. Vergeynst, J. Meys, T.W. Alleman, the Belgian Collaborative Group on COVID-19 Hospital Surveillance and J.M. Baetens
(2023) MATHEMATICAL BIOSCIENCES. 360, 108957.

(81) The potential of surveillance data for dengue risk mapping: an evaluation of different approaches in Cuba
W. Baldoquín Rodríguez, M. Mirabal, P. Van der Stuyft, T. Gómez Padrón, V. Fonseca, R.M. Castillo, S. Monteagudo Díaz, J.M. Baetens, B. De Baets, M.E. Toledo Romaní and V. Vanlerberghe
(2023) TROPICAL MEDICINE AND INFECTIOUS DISEASE. 8, 230.

(80) Lyapunov exponents of multi-state cellular automata
M. Vispoel, A.J. Daly and J.M. Baetens
(2023) CHAOS. 33, 043108.

(79) No bacterial-mediated alleviation of thermal stress in a brown seaweed suggests the absence of ecological bacterial rescue effects
S. Delva, B. De Baets, J.M. Baetens, O. De Clerck and W. Stock
(2023) SCIENCE OF THE TOTAL ENVIRONMENT. 876, 162532.

(78) Quo vadis, agent-based modelling tools?
A.J. Daly, L. De Visscher, J.M. Baetens and B. De Baets
(2022) ENVIRONMENTAL MODELLING AND SOFTWARE. 157, 105514.

(77) Moisture dynamics of wood-based panels and wood fibre insulation materials
L. De Ligne, J. Van Acker, J.M. Baetens, S. Omar, B. De Baets, L. Thygesen, J. Van den Bulcke and E.E. Thybring
(2022) FRONTIERS IN PLANT SCIENCE. 13, 951175.

(76) Improved wood species identification based on multi-view imagery of the three anatomical planes
N. Rosa da Silva, V. Deklerck, J.M. Baetens, J. Van den Bulcke, M. De Ridder, M. Rousseau, O. Martinez Bruno, H. Beeckman, J. Van Acker, B. De Baets and J. Verwaeren
(2022) PLANT METHODS. 18, 79.

(75) Studying the spatio-temporal dynamics of wood decay with X-ray CT scanning
L. De Ligne, A. De Muynck, J. Caes, J.M. Baetens, B. De Baets, L. Van Hoorebeke, J. Van Acker and J. Van den Bulcke
(2022) HOLZFORSCHUNG. 76, 408-420.

(74) Progress, gaps and obstacles in the classification of cellular automata
M. Vispoel, A.J. Daly and J.M. Baetens
(2022) PHYSICA D: NONLINEAR PHENOMENA. 432, 133074.

(73) Interspecies interactions of the 2,6-dichlorobenzamide (BAM) degrading Aminobacter sp. MSH1 with resident sandfilter bacteria: indications for mutual cooperative interactions that improve BAM mineralization activity
J. Vandermaesen, S. Du, A.J. Daly, J.M. Baetens, B. Horemans, B. De Baets, N. Boon and D. Springael
(2022) ENVIRONMENTAL SCIENCE & TECHNOLOGY. 56, 1352-1364.

(72) Assessing the effects of non-pharmaceutical interventions on SARS-CoV-2 transmission by means of an extended SEIQRD model and public mobility data  
T.W. Alleman, J. Vergeynst, L. De Visscher, M. Rollier, D. Illana, E. Torfs, I. Nopens and J.M. Baetens
(2021) EPIDEMICS. 37, 100505.

(71) Cost-effectiveness of COVID-19 policy measures: a systematic review
S. Vandepitte, T.W. Alleman, I. Nopens, J.M. Baetens, S. Coenen and D. De Smedt
(2021) VALUE IN HEALTH. 24, 1551-1569.

(70) Two-dimensional rotation-symmetric number-conserving cellular automata
A. Dzedzej, B. Wolnik, A. Nenca, J.M. Baetens and B. De Baets
(2021) INFORMATION SCIENCES. 577, 599-621.

(69) Unravelling the natural durability of wood: revealing the impact of decay-influencing characteristics other than fungicidal components
L. De Ligne, J. Van den Bulcke, J.M. Baetens, B. De Baets, G. Wang, I. De Windt, H. Beeckman and J. Van Acker
(2021) HOLZFORSCHUNG. 75, 368-378.

(68) Untangling the mechanisms of cryptic species coexistence in a nematode community through individual-based modelling
A.J. Daly, N. De Meester, J.M. Baetens, T. Moens and B. De Baets
(2021) OIKOS. 130, 587-600.

(67) Oceanic response to the consecutive Hurricanes Dorian and Humberto (2019) in the Sargasso Sea
D. Avila-Alonso, J.M. Baetens, R. Cardenas and B. De Baets
(2021) NATURAL HAZARDS AND EARTH SYSTEM SCIENCES. 21, 837-859.

(66) Efficient enumeration of three-state two-dimensional number-conserving cellular automata
A. Dzedzej, B. Wolnik, A. Nenca, J.M. Baetens and B. De Baets
(2020) INFORMATION AND COMPUTATION. 274, 104534.

(65) Quantifying and reducing epistemic uncertainty of passive acoustic telemetry data from longitudinal aquatic systems
S. Bruneel, P. Verhelst, J. Reubens, J.M. Baetens, J. Coeck, T. Moens and P. Goethals
(2020) ECOLOGICAL INFORMATICS. 59, 101133.

(64) Spatio-temporal variability of oceanographic conditions in the Exclusive Economic Zone of Cuba
D. Avila-Alonso, J.M. Baetens, R. Cardenas and B. De Baets
(2020) JOURNAL OF MARINE SYSTEMS. 212, 103416.

(63) A split-and-perturb decomposition of number-conserving cellular automata
B. Wolnik, A. Nenca, J.M. Baetens and B. De Baets
(2020) PHYSICA D: NONLINEAR PHENOMENA. 431, 132645.

(62) Cracking the code: real-time monitoring of wood drying and the occurrence of cracks
H.P. Botter-Kuisch, J. Van den Bulcke, J.M. Baetens and J. Van Acker
(2020) WOOD SCIENCE AND TECHNOLOGY. 54, 1029-1049.

(61) Oceanic response to Hurricane Irma (2017) in the Exclusive Economic Zone of Cuba and the eastern Gulf of Mexico
D. Avila-Alonso, J.M. Baetens, R. Cardenas and B. De Baets
(2020) OCEAN DYNAMICS. 70, 603-619.

(60) Wildfire ignition probability in Belgium
A. Depicker, B. De Baets and J.M. Baetens
(2020) NATURAL HAZARDS AND EARTH SYSTEMS SCIENCES. 20, 363-376.

(59) Identification of Cellular Automata based on incomplete observations with bounded time gaps
W. Bolt, J.M. Baetens and B. De Baets
(2020) IEEE TRANSACTIONS ON CYBERNETICS. 50, 971-984.

(58) Using intransitive triads to determine the final species richness of competition networks
N. Muyinda, J.M. Baetens, B. De Baets and S. Rao
(2020) PHYSICA A. 540, 123249.

(57) Guiding mineralization co-culture discovery using Bayesian optimization
A.J. Daly, M. Stock, J.M. Baetens and B. De Baets
(2019) ENVIRONMENTAL SCIENCE AND TECHNOLOGY. 53, 14459-14469.

(56) A statistical approach to the identification of Diploid Cellular Automata based on incomplete observations
W. Bolt, A. Bolt, B. Wolnik, J.M. Baetens and B. De Baets
(2019) BIOSYSTEMS. 186, 103976.

(55) Lattice-based versus lattice-free individual-based models: impact on coexistence in competitive communities
A.J. Daly, W. Quaghebeur, T.M.A. Depraetere, J.M. Baetens and B. De Baets
(2019) NATURAL COMPUTING. 18, 855-864.

(54) Real-time prediction of influenza outbreaks in Belgium
G.H.B. Miranda, J.M. Baetens, N. Bossuyt, O.M. Bruno and B. De Baets
(2019) EPIDEMICS. 28, 100341.

(53) Analysis of spatio-temporal fungal growth dynamics under different environmental conditions
L. De Ligne, G. Vidal-Diez de Ulzurrun, J.M. Baetens, J. Van Den Bulcke, J. Van Acker and B. De Baets
(2019) IMA FUNGUS. 10, 7.

(52) The impact of hurricanes on biogeochemical indicators of the Exclusive Economic Zone of Cuba
D. Avila-Alonso, J.M. Baetens, R. Cardenas and B. De Baets
(2019) REMOTE SENSING OF ENVIRONMENT. 233, 111339.

(51) A two-layer representation of four-state reversible number-conserving 2D cellular automata
A. Dzedzej, B. Wolnik, M. Dziemiańczuk, A. Nenca, J.M. Baetens and B. De Baets
(2019) JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT. 2019, 073202.

(50) A validated expert-based habitat suitability assessment for Eagle Owls in Limburg, the Netherlands
S. Van Nieuland, J.M. Baetens, S. Vriens, R. Janssen and B. De Baets
(2019) EUROPEAN JOURNAL OF WILDLIFE RESEARCH. 65, 48.

(49) Two-dimensional affine continuous cellular automata solving the relaxed density classification problem
M. Dembowski, B. Wolnik, W. Bolt, J.M. Baetens and B. De Baets
(2019) JOURNAL OF CELLULAR AUTOMATA. 14, 191-212.

(48) Impact of a helical ridge within a tubular membrane channel on fluid flow and particle behaviour: a model-based analysis
W. Naessens, B. De Jaegher, L. Vandewalle, K. Van Geem, J.M. Baetens and I. Nopens
(2018) INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH. 57, 15586-15596.

(47) Three-species competition with non-deterministic outcomes
T. Depraetere, A.J. Daly, J.M. Baetens and B. De Baets
(2018) CHAOS. 28, 123124.

(46) Navigating on a chemical radar: Usage of root exudates by foraging Diabrotica virgifera virgifera larvae
M. Schumann, Z.S. Ladin, J.M. Baetens and I. Hiltpold
(2018) JOURNAL OF APPLIED ENTOMOLOGY. 142, 911-920.

(45) Habitat characteristics of possible hunting grounds of the Eurasian Eagle Owl in Limburg, the Netherlands
S. Van Nieuland, J.M. Baetens, R. Janssen and B. De Baets
(2018) ARDEA. 106, 147-162.

(44) Affine continuous cellular automata solving the fixed-length density classification problem
M. Dembowski, B. Wolnik, W. Bolt, J.M. Baetens and B. De Baets
(2018) NATURAL COMPUTING. 17, 467-477.

(43) Differential post-fledging habitat use of Nearctic-Neotropical migratory birds within an urbanized landscape
Z.S. Ladin, S. Van Nieuland, S.A. Adalsteinsson, V. D'Amico, J.L. Bowman, J.J. Buler, J.M. Baetens, B. De Baets and W.G. Shriver
(2018) MOVEMENT ECOLOGY. 6, 17.

(42) A note on reversibility of 2D cellular automata on hexagonal grids
A. Augustynowicz, J.M. Baetens, B. De Baets, A. Dzedzej, A. Nenca and B. Wolnik
(2018) JOURNAL OF CELLULAR AUTOMATA. 13, 521-525.

(41) Ecological diversity: measuring the unmeasurable
A.J. Daly, J.M. Baetens and B. De Baets
(2018) MATHEMATICS. 6, 119.

(40) Introducing Lyapunov profiles of cellular automata
J.M. Baetens and J. Gravner
(2018) JOURNAL OF CELLULAR AUTOMATA. 13, 267-286.

(39) Individual-based modelling of invasion in bioaugmented sand filter communities
A.J. Daly, J.M. Baetens, J. Vandermaesen, N. Boon, D. Springael and B. De Baets
(2018) PROCESSES. 6, PR6010002.

(38) Number-conserving cellular automata with a von Neumann neighborhood of range one
B. Wolnik, A. Dzedzej, J.M. Baetens and B. De Baets
(2017) JOURNAL OF PHYSICS A: MATHEMATICAL AND THEORETICAL. 50, 435101.

(37) Density-conserving affine continuous cellular automata solving the relaxed density classification problem
B. Wolnik, M. Dembowski, W. Bolt, J.M. Baetens and B. De Baets
(2017) JOURNAL OF PHYSICS A: MATHEMATICAL AND THEORETICAL. 50, 345103.

(36) Assessing the effects of ultraviolet radiation on the photosynthetic potential in Archean marine environments
D. Avila-Alonso, J.M. Baetens, R. Cardenas and B. De Baets
(2017) INTERNATIONAL JOURNAL OF ASTROBIOLOGY. 16, 271-279.

(35) Modelling the effect of ultraviolet radiation on the photosynthetic potential of Prochlorococcus and Synechococcus cyanobacteria
D. Avila-Alonso, J.M. Baetens, R. Cardenas and B. De Baets
(2017) AQUATIC MICROBIAL ECOLOGY. 79, 149-164.

(34) Automated classification of wood transverse cross-section micro-imagery from 77 commercial Central-African timber species
N. Rosa da Silva, M. De Ridder, J.M. Baetens, J. Van den Bulcke, M. Rousseau, O. Martinez Bruno, H. Beeckman, J. Van Acker and B. De Baets
(2017) ANNALS OF FOREST SCIENCE. 74, 30.

(33) On the iota-delta function: a link between cellular automata and partial differential equations for modeling advection-dispersion from a constant source
L.C. de Sena Monteiro Ozelim, A.L.B. Cavalcante and J.M. Baetens
(2017) THE JOURNAL OF SUPERCOMPUTING. 73, 700-712.

(32) An analytical description of the time-integrated Brownian bridge
S. Van Nieuland, J.M. Baetens, H. De Meyer and B. De Baets
(2017) JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS. 36, 627-645.

(31) Modelling three-dimensional fungal growth in response to environmental stimuli
G. Vidal-Diez de Ulzurrun, J.M. Baetens, J. Van den Bulcke and B. De Baets
(2017) JOURNAL OF THEORETICAL BIOLOGY. 414, 35-49.

(30) On the dynamics of stochastic elementary cellular automata
J.M. Baetens, W. Van der Meeren and B. De Baets
(2017) JOURNAL OF CELLULAR AUTOMATA. 12, 63-80.

(29) The impact of resource dependence of the mechanisms of life on the spatial population dynamics of an in silico microbial community
A.J. Daly, J.M. Baetens and B. De Baets
(2016) CHAOS. 26, 123121.

(28) Stability of cellular automata trajectories revisited: branching walks and Lyapunov profiles
J.M. Baetens and J. Gravner
(2016) JOURNAL OF NONLINEAR SCIENCE. 26, 1329–1367.

(27) Spatially explicit modelling of the Belgian major endurance event `The 100 km Dodentocht'
S. Van Nieuland, J.M. Baetens and B. De Baets
(2016) PLOS ONE. 11, e0164981.

(26) Long-term dynamics in local host-parasite interactions linked to regional population trends
Z. Ladin, V. d’Amico, J.M. Baetens, R.R. Roth and W.G. Shriver
(2016) ECOSPHERE. 7, e01420.

(25) Predicting metapopulation responses to conservation in human-dominated landscapes
Z. Ladin, V. d’Amico, J.M. Baetens, R.R. Roth and W.G. Shriver
(2016) FRONTIERS IN ECOLOGY AND EVOLUTION. 4, 122.

(24) Classification of cellular automata through texture analysis
N. Rosa da Silva, J.M. Baetens, M.W. da Silva Oliveira, B. De Baets and O.M. Bruno
(2016) INFORMATION SCIENCES. 370-371, 33-49.

(23) In silico substrate dependence increases community productivity, threatens biodiversity
A.J. Daly, J.M. Baetens and B. De Baets
(2016) PHYSICAL REVIEW E. 93, 042414.

(22) On the decomposition of stochastic cellular automata
W. Bolt, J.M. Baetens and B. De Baets
(2015) JOURNAL OF COMPUTATIONAL SCIENCE. 11, 245-257.

(21) The impact of initial evenness on biodiversity maintenance for a four-species in silico bacterial community
A.J. Daly, J.M. Baetens and B. De Baets
(2015) JOURNAL OF THEORETICAL BIOLOGY. 387, 189-205.

(20) Automated image-based analysis of spatio-temporal fungal dynamics
G. Vidal-Diez de Ulzurrun, J.M. Baetens, J. Van den Bulcke, C. Lopez-Molina, I. De Windt and B. De Baets
(2015) FUNGAL GENETICS AND BIOLOGY. 84, 12-25.

(19) A dynamical systems approach to the discrimination of the modes of operation of cryptographic systems
J. Machicao, J.M. Baetens, A.G. Marco, B. De Baets and O.M. Bruno
(2015) COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION. 29, 102-115.

(18) Unsupervised ridge detection using second order anisotropic Gaussian kernels
C. Lopez-Molina, G. Vidal-Diez de Ulzurrun, J.M. Baetens, J. Van den Bulcke and B. De Baets
(2015) SIGNAL PROCESSING. 116, 55-67.

(17) Network formation by contact arrested propagation
A. Hafver, E. Jettestuen, J.M. Baetens and M. Malthe-Sørenssen
(2014) PHYSICA A. 413, 240-255.

(16) Quantification of soil surface roughness evolution under simulated rainfall
J. Vermang, L.D. Norton, J.M. Baetens, C. Huang, W.M. Cornelis and D. Gabriels
(2013) TRANSACTIONS OF THE ASABE. 56, 505-514.

(15) Modelling a pike (Esox lucius) population in a lowland river using a cellular automaton
I.S. Pauwels, A.M. Mouton, J.M. Baetens, S. Van Nieuland, B. De Baets and P.L.M. Goethals
(2013) ECOLOGICAL INFORMATICS. 17, 46-57.

(14) A discrete stochastic model for oil migration in chocolate-coated confectionery
P. Van der Weeën, N. De Clercq, J.M. Baetens, C. Delbaere, K. Dewettinck and B. De Baets
(2013) JOURNAL OF FOOD ENGINEERING. 119, 602-610.

(13) An individual-based model for the migration of pike (Esox lucius) in the river Yser, Belgium
J.M. Baetens, S. Van Nieuland, I.S. Pauwels, B. De Baets, A.M. Mouton and P.L.M. Goethals
(2013) ECOLOGICAL MODELLING. 258, 40-52.

(12) Topology-induced phase transitions in totalistic cellular automata
J.M. Baetens and B. De Baets
(2013) PHYSICA D: NONLINEAR PHENOMENA. 249, 16-24.

(11) Influence of the topology of a cellular automaton on its dynamical properties
J.M. Baetens, K. De Loof and B. De Baets
(2013) COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATIONS. 18, 651-668.

(10) Cellular automata on irregular tessellations
J.M. Baetens and B. De Baets
(2012) DYNAMICAL SYSTEMS. 27, 411-430.

(9) Modelling the degradation kinetics of vitamin C in fruit juice in relation to the initial headspace oxygen concentration
I. Van Bree, J.M. Baetens, S. Samapundo, F. Devlieghere, R. Laleman, I. Vandekinderen, B. Noseda, R. Xhaferi, B. De Baets and B. De Meulenaer
(2012) FOOD CHEMISTRY. 134, 207-214.

(8) Modeling the photocatalytic degradation of moxifloxacin by means of a stochastic cellular automaton
P. Van der Weeën, J.M. Baetens, J. Verwaeren, X. Van Doorslaer, P.M. Heynderickx, J. Dewulf and B. De Baets
(2012) CHEMICAL ENGINEERING JOURNAL. 188, 181-190.

(7) An empirical analysis of explanatory variables affecting Fusarium head blight infection and deoxynivalenol content in wheat
S. Landschoot, W. Waegeman, K. Audenaert, J. Vandepitte, J.M. Baetens, B. De Baets and G. Haesaert
(2012) JOURNAL OF PLANT PATHOLOGY. 94, 135-147.

(6) Effect of asynchronous updating on the stability of cellular automata
J.M. Baetens, P. Van der Weeën and B. De Baets
(2012) CHAOS, SOLITONS AND FRACTALS. 45, 383-394.

(5) Design and parameterization of a stochastic cellular automaton describing a chemical reaction
P. Van der Weeën, J.M. Baetens and B. De Baets
(2011) JOURNAL OF COMPUTATIONAL CHEMISTRY. 32, 1952-1961.

(4) On the topological sensitivity of cellular automata
J.M. Baetens and B. De Baets
(2011) CHAOS. 21, 023108.

(3) Phenomenological study of irregular cellular automata based on Lyapunov exponents and Jacobians
J.M. Baetens and B. De Baets
(2010) CHAOS. 20, 033112.

(2) On the influence of coarse fragments on soil-water retention
J.M. Baetens, K. Verbist, W.M. Cornelis, D. Gabriels, and G. Soto
(2009) WATER RESOURCES RESEARCH. 45, W07408.

(1) Hydraulic conductivity as influenced by stoniness in degraded drylands of Chile
K. Verbist, J.M. Baetens, W.M. Cornelis, D. Gabriels, C. Torres, and G. Soto
(2009) SOIL SCIENCE SOCIETY OF AMERICA JOURNAL. 73, 471-484.

Journal Papers (ISI)

Authors

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