KERMIT -- Research Unit Knowledge-based Systems

Journal Papers (ISI)

Authors

All
B. De Baets (33)
M. Stock (10)
A.J. Daly (3)
M. Van Haeverbeke (3)
B. Wolnik (2)
M. Dembowski (1)
M. Vispoel (1)

(48) The specific capsule depolymerase of phage PMK34 sensitizes Acinetobacter baumannii to serum killing
K.A.S. Abdelkader, D.G. Fernandez, A. Łątka, D. Boeckaerts, Z. Drulis-Kawa, B. Criel, H. Gerstmans, A. Safaan, A.S. Khairalla, Y. Gaber, T. Dishisha and Y. Briers
(2022) ANTIOBIOTICS-BASEL. 11, 677.

(47) Innovative rhizosphere-based enrichment under P-limitation selects for bacterial isolates with high-performance P-solubilizing traits
N. De Zutter, M. Ameye, P. Vermeir, J. Verwaeren, L. De Gelder and K. Audenaert
(2022) MICROBIOLOGY SPECTRUM. 10, e02052-22.

(46) Optimising predictive models to prioritise viral discovery in zoonotic reservoirs
D.J. Becker, G.F. Albery, A.R. Sjodin, T. Poisot, L.M. Bergner, B. Chen, L.E. Cohen, T.A. Dallas, E.A. Eskew, A.C. Fagre, M.J. Farrell, S. Guth, B.A. Han, N.B. Simmons, M. Stock, E.C. Teeling and C.J. Carlson
(2022) THE LANCET MICROBE. 3, e625-e637.

(45) Multiscale analysis of monoglyceride oleogels during storing
K. Rondou, F. De Witte, T. Rimaux, W. Dewinter, K. Dewettinck, J. Verwaeren and F. Van Bockstaele
(2022) JOURNAL OF THE AMERICAN OIL CHEMISTS' SOCIETY. 99, 1019-1031.

(44) Quo vadis, agent-based modelling tools?
A.J. Daly, L. De Visscher, J.M. Baetens and B. De Baets
(2022) ENVIRONMENTAL MODELLING AND SOFTWARE. 157, 105514.

(43) A complete description of the dynamics of legal outer-totalistic affine continuous cellular automata
B. Wolnik, M. Dembowski, A. Augustynowicz and B. De Baets
(2022) NONLINEAR DYNAMICS. 110, 589-610.

(42) Idempotent uninorms on a complete chain
Y. Ouyang, H.-P. Zhang, Z. Wang and B. De Baets
(2022) FUZZY SETS AND SYSTEMS. 448, 107-126.

(41) Leveraging plant physiological dynamics using physical reservoir computing
O. Pieters, T. De Swaef, M. Stock and F. wyffels
(2022) SCIENTIFIC REPORTS. 12, 12594.

(40) Joint global metric learning and local manifold preservation for scene recognition
C. Wang, G. Peng and B. De Baets
(2022) INFORMATION SCIENCES. 610, 938-956.

(39) Altered intravenous drug disposition in people living with cystic fibrosis: A meta-analysis integrating top-down and bottom-up data
P.J. De Sutter, M. Van Haeverbeke, E. Van Braeckel, S. Van Biervliet, J. Van Bocxlaer, A. Vermeulen and E. Gasthuys
(2022) CPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY. 11, 951-966.

(38) Machine learning techniques to characterize functional traits of plankton from image data
E. Orenstein, S.-D. Ayata, F. Maps, T. Biard, E. Becker, F. Benedetti, T. de Garidel-Thoron, J.S. Ellen, F. Ferrario, S.L.C. Giering, T. Guy-Haim, L. Hoebeke, M. Iversen, T. Kiørboe, J.-F. Lalonde, A. Lana, M. Laviale, F. Lombard, T. Lorimer, S. Martini, A. Meyer, K.O. Möller, B. Niehoff, M. Ohman, C. Pradalier, J.-B. Romagnan, S.-M. Schröder, V. Sonnet, H.M. Sosik, L. Stemmann, M. Stock, T. Terbiyik-Kurt, N. Valcàrcel-Pérez, L. Vilgrain, G. Wacquet, A. Waite and J.-O. Irisson
(2022) LIMNOLOGY AND OCEANOGRAPHY. 67, 1647-1669.

(37) Ordinal classification with a spectrum of information sources
M. Tang, R. Pérez-Fernández and B. De Baets
(2022) EXPERT SYSTEMS WITH APPLICATIONS. 208, 118163.

(36) Adaptive scoping: balancing short- and long-term genetic gain in plant breeding
D. Vanavermaete, J. Fostier, S. Maenhout and B. De Baets
(2022) EUPHYTICA. 218, 109.

(35) Moisture dynamics of wood-based panels and wood fibre insulation materials
L. De Ligne, J. Van Acker, J.M. Baetens, S. Omar, B. De Baets, L. Thygesen, J. Van den Bulcke and E.E. Thybring
(2022) FRONTIERS IN PLANT SCIENCE. 13, 951175.

(34) Qualitative team formation analysis in football: a case study of the 2018 FIFA World Cup
J. Beernaerts, B. De Baets, M. Lenoir and N. Van de Weghe
(2022) FRONTIERS IN PSYCHOLOGY. 13, 863216.

(33) Machine learning to assist in large-scale, activity-based synthetic cannabinoid receptor agonist screening of serum samples
L. Janssens, D. Boeckaerts, S. Hudson, D. Morozova, A. Cannaert, D.M. Wood, C. Wolfe, B. De Baets, M. Stock, P.I. Dargan and C.P. Stove
(2022) CLINICAL CHEMISTRY. 68, 906-916.

(32) Covering the combinatorial design space of multiplex CRISPR/Cas experiments in plants
K. Van Huffel, M. Stock, T. Ruttink and B. De Baets
(2022) FRONTIERS IN PLANT SCIENCE. 13, 907095.

(31) Lifting associative operations on subposets of a complete lattice
Y. Dan and B. De Baets
(2022) FUZZY SETS AND SYSTEMS. 441, 286-309.

(30) Identification of phage receptor-binding protein sequences with hidden Markov models and an extreme gradient boosting classifier
D. Boeckaerts, M. Stock, B. De Baets and Y. Briers
(2022) VIRUSES. 14, 1329.

(29) Improved wood species identification based on multi-view imagery of the three anatomical planes
N. Rosa da Silva, V. Deklerck, J.M. Baetens, J. Van den Bulcke, M. De Ridder, M. Rousseau, O. Martinez Bruno, H. Beeckman, J. Van Acker, B. De Baets and J. Verwaeren
(2022) PLANT METHODS. 18, 79.

(28) Bipolar equations on complete distributive symmetric residuated lattices: The case of a join-irreducible right-hand side
M.E. Cornejo, D. Lobo, J. Medina and B. De Baets
(2022) FUZZY SETS AND SYSTEMS. 442, 92-108.

(27) Studying the spatio-temporal dynamics of wood decay with X-ray CT scanning
L. De Ligne, A. De Muynck, J. Caes, J.M. Baetens, B. De Baets, L. Van Hoorebeke, J. Van Acker and J. Van den Bulcke
(2022) HOLZFORSCHUNG. 76, 408-420.

(26) Equivalent electrical circuits and their use across electrochemical impedance spectroscopy application domains
M. Van Haeverbeke, M. Stock and B. De Baets
(2022) IEEE ACCESS. 10, 51363-51379.

(25) Embedding metric learning into an extreme learning machine for scene recognition
C. Wang, G. Peng and B. De Baets
(2022) EXPERT SYSTEMS WITH APPLICATIONS. 203, 117505.

(24) A complete representation theorem for nullnorms on bounded lattices with ample illustrations
H.-P. Zhang, Y. Ouyang, Z. Wang and B. De Baets
(2022) FUZZY SETS AND SYSTEMS. 439, 157-169.

(23) Nullnorms on bounded lattices constructed by means of closure and interior operators
Y. Dan, B.Q. Hu and B. De Baets
(2022) FUZZY SETS AND SYSTEMS. 439, 142-156.

(22) On triangular norms representable as ordinal sums based on interior operators on a bounded meet semilattice
Y. Ouyang, H.-P. Zhang, Z. Wang and B. De Baets
(2022) FUZZY SETS AND SYSTEMS. 439, 89-101.

(21) Day versus night use of forest by red and roe deer as determined by Corine Land Cover and Copernicus Tree Cover Density
M. Salvatori, J. De Groeve, E. van Loon, B. De Baets, N. Morellet, S. Focardi, N. Bonnot, B. Gehr, M. Griggio, M. Heurich, M. Kroeschel, A. Licoppe, P. Moorcroft, L. Pedrotti, J. Signer, N. Van de Weghe and F. Cagnacci
(2022) LANDSCAPE ECOLOGY. 37, 1453-1468.

(20) Comparing a product-specific versus a general emoji list to measure consumers' emotional associations with chocolate and predict food choice
J.J. Schouteten, J. Verwaeren, L. Rini and V.L. Almli
(2022) FOOD RESEARCH INTERNATIONAL. 157, 111299.

(19) Hydraulics and beyond: a review on water potential as pivotal driver of physiological processes in plant models
T. De Swaef, O. Pieters, S. Appeltans, I. Borra-Serrano, W. Coudron, V. Couvreur, S. Garré, P. Lootens, B. Nicolaï, L. Pols, C. Saint Cast, J. Šalagovič, M. Van Haeverbeke, M. Stock and F. wyffels
(2022) IN SILICO PLANTS. 4, 1-28.

(18) Impact of bias nonstationarity on the performance of uni- and multivariate bias-adjusting methods: a case study on data from Uccle, Belgium
J. Van de Velde, M. Demuzere, B. De Baets and N.E.C. Verhoest
(2022) HYDROLOGY AND EARTH SYSTEM SCIENCES. 26, 2319-2344.

(17) Predicting the hydrodynamic properties of a bioreactor: conditional density estimation as a surrogate model for CFD simulations
U. Kaya, S. Gopireddy, N. Urbanetz, I. Nopens and J. Verwaeren
(2022) CHEMICAL ENGINEERING RESEARCH AND DESIGN. 182, 342-359.

(16) Multi-target prediction for dummies using two-branch neural networks
D. Iliadis, B. De Baets and W. Waegeman
(2022) MACHINE LEARNING. 111, 651-684.

(15) The Hukuhara difference, gH-difference and gh-division are not inclusion isotonic
T.M. Costa, W.A. Lodwick and B. De Baets
(2022) FUZZY SETS AND SYSTEMS. 435, 44-54.

(14) CpG Transformer for imputation of single-cell methylomes
G. De Waele, J. Clauwaert, G. Menschaert and W. Waegeman
(2022) BIOINFORMATICS. 38, 597-603.

(13) Uncovering new insights and misconceptions on the effectiveness of phosphate solubilizing rhizobacteria in plants: a meta-analysis
N. De Zutter, M. Amey, B. Bekaert, J. Verwaeren, L. De Gelder and K. Audenaert
(2022) FRONTIERS IN PLANT SCIENCE. 13, 858804.

(12) Hybrid differential equations: integrating mechanistic and data-driven techniques for modelling of water systems
W. Quaghebeur, E. Torfs, B. De Baets and I. Nopens
(2022) WATER RESOURCES. 213, 118166.

(11) Class-specific discriminative metric learning for scene recognition
C. Wang, G. Peng and B. De Baets
(2022) PATTERN RECOGNITION. 126, 1085899.

(10) Maximal directions of monotonicity of an aggregation function
B. De Baets and H. De Meyer
(2022) FUZZY SETS AND SYSTEMS. 433, 54-78.

(9) Progress, gaps and obstacles in the classification of cellular automata
M. Vispoel, A.J. Daly and J.M. Baetens
(2022) PHYSICA D: NONLINEAR PHENOMENA. 432, 133074.

(8) Novel transformer networks for improved sequence labeling in genomics
J. Clauwaert and W. Waegeman
(2022) IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. 19, 97-106.

(7) Interspecies interactions of the 2,6-dichlorobenzamide (BAM) degrading Aminobacter sp. MSH1 with resident sandfilter bacteria: indications for mutual cooperative interactions that improve BAM mineralization activity
J. Vandermaesen, S. Du, A.J. Daly, J.M. Baetens, B. Horemans, B. De Baets, N. Boon and D. Springael
(2022) ENVIRONMENTAL SCIENCE & TECHNOLOGY. 56, 1352-1364.

(6) BioCCP.jl: Collecting Coupons in combinatorial biotechnology
K. Van Huffel, M. Stock and B. De Baets
(2022) BIOINFORMATICS. 38, 1144-1145.

(5) Heterogeneity hampers the identification of general pressure injury risk factors in intensive care populations: A predictive modelling analysis
M. Deschepper, S. O. Labeau, W. Waegeman and S. I. Blot
(2022) INTENSIVE AND CRITICAL CARE NURSING. 68, 103117.

(4) Digital phagograms: predicting phage infectivity through a multi-layer machine learning approach
C. Lood, D. Boeckaerts, M. Stock, B. De Baets, R. Lavigne, V. Van Noort and Y. Briers
(2022) CURRENT OPINION IN VIROLOGY. 52, 174-181.

(3) A representation of nullnorms on a bounded lattice in terms of beam operations
H.-P. Zhang, Z. Wang, Y. Ouyang and B. De Baets
(2022) FUZZY SETS AND SYSTEMS. 427, 149-160.

(2) A characterization of idempotent nullnorms on bounded lattices
H.-P. Zhang, Y. Ouyang, Z. Wang and B. De Baets
(2022) INFORMATION SCIENCES. 586, 676-687.

(1) Reversibility of number-conserving 1D cellular automata: unlocking insights into the dynamics for larger state sets
B. Wolnik, M. Dziemiańczuk, A. Dzedzej and B. De Baets
(2022) PHYSICA D: NONLINEAR PHENOMENA. 429, 133075.

Journal Papers (ISI)

Authors

Year